The issue arises from the line gene_mutation_df = df.groupby(['Hugo_Symbol']).apply(mutations_for_gene). This line groups the data by ‘Hugo_Symbol’ and applies the mutations_for_gene function to each group, resulting in an empty dataframe. To fix this, you need to make sure that the mutations_for_gene function is returning a non-empty dataframe. Here’s an updated version of your code: def prep_data(mutation_path): df = pd.read_csv(mutation_path, low_memory=True, dtype=str, header=0) df.columns = df.columns.str.strip() df = df[~df['Hugo_Symbol'].str.contains('Hugo_Symbol')] df['Hugo_Symbol'] = '\'' + df['Hugo_Symbol'].

Understanding RInside and Rcpp in C++ Applications RInside is a package for R that allows interaction with C++ code. It provides an interface between C++ and R, enabling C++ developers to call R functions, use R data structures, and integrate R into their C++ applications. Rcpp, on the other hand, is a package for R that extends the functionality of R by providing access to C++ libraries and tools. It allows R users to leverage the performance and efficiency of C++ code in their R projects.

Replacing Conditional Statements with More Idiomatic Pandas Methods In this post, we’ll explore various ways to replace traditional if-else statements with more idiomatic pandas methods. We’ll delve into the world of data manipulation and examine several approaches to achieve similar results. General Solutions: Leveraging Numpy and Pandas Functions When working with pandas DataFrames, it’s often useful to leverage numpy functions and pandas’ built-in methods for efficient data manipulation. In this section, we’ll discuss two general solutions that utilize numpy and pandas functions.

Understanding Datasets in R: Defining and Manipulating Data for Efficiency Introduction R is a powerful programming language and environment for statistical computing and graphics. It provides an extensive range of tools and techniques for data manipulation, analysis, and visualization. One common task when working with datasets in R is to access specific variables or columns without having to prefix the column names with $. This can be particularly time-consuming, especially when dealing with large datasets.

Defining Unique Constraints on Multiple Columns in Multiple Tables in Postgres Introduction Postgresql is a powerful and feature-rich relational database management system. One of its key strengths is the ability to enforce complex constraints on data, ensuring data consistency and integrity. In this article, we will explore how to define unique constraints on multiple columns across multiple tables in postgresql. Understanding Unique Constraints A unique constraint in postgresql ensures that each value within a column or set of columns is unique.

Understanding the Limits of Floating Point Arithmetic in Python When working with numerical data, it’s essential to be aware of the limitations of floating-point arithmetic in Python. In this article, we’ll delve into the world of NumPy and Pandas, exploring why np.isfinite(df2.all()) returns True for all columns in a DataFrame. Background: The Nature of Floating-Point Arithmetic Floating-point numbers are used to represent real numbers in computers. However, due to the way they’re represented, there are inherent limitations and inaccuracies.

Reading Subcolumns from Excel into Python and Displaying them in a DataFrame with Streamlit In this article, we will explore the process of reading subcolumns from an Excel file using Python and display them in a DataFrame using the Streamlit library. Introduction Python is a popular programming language used extensively in data analysis and science. The pandas library provides efficient data structures and operations for data manipulation and analysis. Streamlit, on the other hand, is a high-level library that allows us to create web applications quickly and easily.

Customizing UITabbarItems and Margins in iPad Apps Introduction In the world of iOS development, UITabbar is a fundamental component that provides users with an easy-to-use navigation system. One of its key features is the ability to customize the appearance and behavior of individual UITabBarItems. In this article, we will delve into the technical aspects of changing the width of UITabBarItems and adjusting margins between them in iPad applications. Background When working with UITabbar in an iPad app, it’s essential to understand its layout hierarchy.

Understanding BigQuery Permissions and Access Control As a data analyst or engineer working with BigQuery, it’s essential to understand how permissions and access control work. In this article, we’ll delve into the world of BigQuery permissions, explore the different roles and their capabilities, and provide step-by-step guidance on how to enable permissions to query tables in BigQuery. Introduction to BigQuery Permissions BigQuery uses a permission-based model to govern access to its data.

Converting a Subset of Factors in a DataFrame to Numeric Values Using as.numeric(levels(f))[f] Introduction Working with dataframes can be an overwhelming experience, especially when dealing with factors that need to be converted to their original numeric values. In this article, we will explore how to convert a subset of factors in a dataframe to numeric values using the as.numeric(levels(f))[f] method. Understanding Factors and Their Representation A factor is a type of data in R that represents categorical or discrete data.